Theoretical study of the adsorption of RNA/DNA bases on the external surfaces of Na+-montmorillonite

Pierre Mignon, Piero Ugliengo, Mariona Sodupe

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52 Citations (Scopus)

Abstract

This work analyzes the adsorption of RNA/DNA nucleobases on the external surfaces of Na+-montmorillonite by using periodic plane wave calculations based on the PBE functional. The adsorption energies were corrected by a posteriori added empirical term to account for purely dispersive interactions. Adsorption has been considered either on the side comprising the Na+ counterion or on the opposite side, where only siloxane bonds are present. Different orientations of the nucleobases (parallel and orthogonal to the surface plane) have been considered. The results show that guanine and cytosine, for which the metal cation interacts with two basic centers (N and O), are the ones with larger adsorption energies (-27.6 kcal mol-1 for GO6N7 and -27.0 kcal mol-1 for CO2N3). The remaining three bases present smaller adsorption energies (-21.7 for T π(O4)), -21.2 for Uπ(O4) and -20.2 kcal mol -1 for AN3). On the other hand, adsorption of the nucleobase on the surface free from Na+, either in a face-to-face or orthogonal orientation, was found to be sizable for all bases (from -3.7 to -11.3 kcal mol-1), due to the stabilizing effect of dispersion interactions. © 2009 American Chemical Society.
Original languageEnglish
Pages (from-to)13741-13749
JournalJournal of Physical Chemistry C
Volume113
Issue number31
DOIs
Publication statusPublished - 6 Aug 2009

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