Standard and specific compression techniques for DNA microarray images

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2 Citations (Scopus)

Abstract

We review the state of the art in DNA microarray image compression and provide original comparisons between standard and microarray-specific compression techniques that validate and expand previous work. First, we describe the most relevant approaches published in the literature and classify them according to the stage of the typical image compression process where each approach makes its contribution, and then we summarize the compression results reported for these microarray-specific image compression schemes. In a set of experiments conducted for this paper, we obtain new results for several popular image coding techniques that include the most recent coding standards. Prediction-based schemes CALIC and JPEG-LS are the best-performing standard compressors, but are improved upon by the best microarray-specific technique, Battiato's CNN-based scheme. © 2012 by the authors.
Original languageEnglish
Pages (from-to)30-49
JournalAlgorithms
Volume5
Issue number1
DOIs
Publication statusPublished - 1 Mar 2012

Keywords

  • Image coding standards
  • JPEG2000
  • Microarray image compression
  • Microarray images

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