TY - JOUR
T1 - EASY-APP: An artificial intelligence model and application for early and easy prediction of severity in acute pancreatitis
AU - Kui, Balázs
AU - Pintér, József
AU - Molontay, Roland
AU - Nagy, Marcell
AU - Farkas, Nelli
AU - Gede, Noémi
AU - Vincze, Áron
AU - Bajor, Judit
AU - Gódi, Szilárd
AU - Czimmer, József
AU - Szabó, Imre
AU - Illés, Anita
AU - Sarlós, Patrícia
AU - Hágendorn, Roland
AU - Pár, Gabriella
AU - Papp, Mária
AU - Vitális, Zsuzsanna
AU - Kovács, György
AU - Fehér, Eszter
AU - Földi, Ildikó
AU - Izbéki, Ferenc
AU - Gajdán, László
AU - Fejes, Roland
AU - Németh, Balázs Csaba
AU - Török, Imola
AU - Farkas, Hunor
AU - Mickevicius, Artautas
AU - Sallinen, Ville
AU - Galeev, Shamil
AU - Ramírez-Maldonado, Elena
AU - Párniczky, Andrea
AU - Erőss, Bálint
AU - Hegyi, Péter Jenő
AU - Márta, Katalin
AU - Váncsa, Szilárd
AU - Sutton, Robert
AU - Szatmary, Peter
AU - Latawiec, Diane
AU - Halloran, Chris
AU - de-Madaria, Enrique
AU - Pando, Elizabeth
AU - Alberti, Piero
AU - Gómez-Jurado, Maria José
AU - Tantau, Alina
AU - Szentesi, Andrea
AU - Hegyi, Péter
N1 - © 2022 The Authors. Clinical and Translational Medicine published by John Wiley & Sons Australia, Ltd on behalf of Shanghai Institute of Clinical Bioinformatics.
PY - 2022/6
Y1 - 2022/6
N2 - BACKGROUND: Acute pancreatitis (AP) is a potentially severe or even fatal inflammation of the pancreas. Early identification of patients at high risk for developing a severe course of the disease is crucial for preventing organ failure and death. Most of the former predictive scores require many parameters or at least 24 h to predict the severity; therefore, the early therapeutic window is often missed.METHODS: The early achievable severity index (EASY) is a multicentre, multinational, prospective and observational study (ISRCTN10525246). The predictions were made using machine learning models. We used the scikit-learn, xgboost and catboost Python packages for modelling. We evaluated our models using fourfold cross-validation, and the receiver operating characteristic (ROC) curve, the area under the ROC curve (AUC), and accuracy metrics were calculated on the union of the test sets of the cross-validation. The most critical factors and their contribution to the prediction were identified using a modern tool of explainable artificial intelligence called SHapley Additive exPlanations (SHAP).RESULTS: The prediction model was based on an international cohort of 1184 patients and a validation cohort of 3543 patients. The best performing model was an XGBoost classifier with an average AUC score of 0.81 ± 0.033 and an accuracy of 89.1%, and the model improved with experience. The six most influential features were the respiratory rate, body temperature, abdominal muscular reflex, gender, age and glucose level. Using the XGBoost machine learning algorithm for prediction, the SHAP values for the explanation and the bootstrapping method to estimate confidence, we developed a free and easy-to-use web application in the Streamlit Python-based framework (http://easy-app.org/).CONCLUSIONS: The EASY prediction score is a practical tool for identifying patients at high risk for severe AP within hours of hospital admission. The web application is available for clinicians and contributes to the improvement of the model.
AB - BACKGROUND: Acute pancreatitis (AP) is a potentially severe or even fatal inflammation of the pancreas. Early identification of patients at high risk for developing a severe course of the disease is crucial for preventing organ failure and death. Most of the former predictive scores require many parameters or at least 24 h to predict the severity; therefore, the early therapeutic window is often missed.METHODS: The early achievable severity index (EASY) is a multicentre, multinational, prospective and observational study (ISRCTN10525246). The predictions were made using machine learning models. We used the scikit-learn, xgboost and catboost Python packages for modelling. We evaluated our models using fourfold cross-validation, and the receiver operating characteristic (ROC) curve, the area under the ROC curve (AUC), and accuracy metrics were calculated on the union of the test sets of the cross-validation. The most critical factors and their contribution to the prediction were identified using a modern tool of explainable artificial intelligence called SHapley Additive exPlanations (SHAP).RESULTS: The prediction model was based on an international cohort of 1184 patients and a validation cohort of 3543 patients. The best performing model was an XGBoost classifier with an average AUC score of 0.81 ± 0.033 and an accuracy of 89.1%, and the model improved with experience. The six most influential features were the respiratory rate, body temperature, abdominal muscular reflex, gender, age and glucose level. Using the XGBoost machine learning algorithm for prediction, the SHAP values for the explanation and the bootstrapping method to estimate confidence, we developed a free and easy-to-use web application in the Streamlit Python-based framework (http://easy-app.org/).CONCLUSIONS: The EASY prediction score is a practical tool for identifying patients at high risk for severe AP within hours of hospital admission. The web application is available for clinicians and contributes to the improvement of the model.
KW - Acute pancreatitis
KW - Artificial intelligence
KW - Severity prediction
KW - Acute pancreatitis
KW - Artificial intelligence
KW - Severity prediction
KW - Acute pancreatitis
KW - Artificial intelligence
KW - Severity prediction
U2 - 10.1002/ctm2.842
DO - 10.1002/ctm2.842
M3 - Article
C2 - 35653504
SN - 2001-1326
VL - 12
JO - Clinical and Translational Medicine
JF - Clinical and Translational Medicine
IS - 6
ER -