ASAP: Analysis of peptide composition

Xavier Serra-hartman; Xavier Rebordosa; Jaume Piñol; Enrique Querol; Marc A. Martí-Renom

ASAP: Analysis of peptide composition

Xavier Serra-hartman, Xavier Rebordosa, Jaume Piñol, Enrique Querol, Marc A. Martí-Renom

Research output: Contribution to journal › Article › Research › peer-review

Abstract

ASAP is a web tool designed to search for specific dipeptides, tripeptides and tetrapeptides in a protein sequence database. The server allows for: (a) identification of frequent and infrequent peptides and the creation of peptide probability tables for a given database of sequences (GenerNet program), (b) determination of the compatibility of an amino-acid sequence to the given peptide probability tables (ClonErrNet program); and (c) comparison of different protein databases based on peptide composition (CompNet program). ASAP server can be useful in protein engineering and/or protein classification studies.

Original language	English
Pages (from-to)	1153-1154
Journal	Bioinformatics
Volume	16
Issue number	12
Publication status	Published - 1 Dec 2000

Cite this

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title = "ASAP: Analysis of peptide composition",

abstract = "ASAP is a web tool designed to search for specific dipeptides, tripeptides and tetrapeptides in a protein sequence database. The server allows for: (a) identification of frequent and infrequent peptides and the creation of peptide probability tables for a given database of sequences (GenerNet program), (b) determination of the compatibility of an amino-acid sequence to the given peptide probability tables (ClonErrNet program); and (c) comparison of different protein databases based on peptide composition (CompNet program). ASAP server can be useful in protein engineering and/or protein classification studies.",

author = "Xavier Serra-hartman and Xavier Rebordosa and Jaume Pi{\~n}ol and Enrique Querol and Mart{\'i}-Renom, \{Marc A.\}",

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T1 - ASAP: Analysis of peptide composition

AU - Serra-hartman, Xavier

AU - Rebordosa, Xavier

AU - Piñol, Jaume

AU - Querol, Enrique

AU - Martí-Renom, Marc A.

PY - 2000/12/1

Y1 - 2000/12/1

N2 - ASAP is a web tool designed to search for specific dipeptides, tripeptides and tetrapeptides in a protein sequence database. The server allows for: (a) identification of frequent and infrequent peptides and the creation of peptide probability tables for a given database of sequences (GenerNet program), (b) determination of the compatibility of an amino-acid sequence to the given peptide probability tables (ClonErrNet program); and (c) comparison of different protein databases based on peptide composition (CompNet program). ASAP server can be useful in protein engineering and/or protein classification studies.

AB - ASAP is a web tool designed to search for specific dipeptides, tripeptides and tetrapeptides in a protein sequence database. The server allows for: (a) identification of frequent and infrequent peptides and the creation of peptide probability tables for a given database of sequences (GenerNet program), (b) determination of the compatibility of an amino-acid sequence to the given peptide probability tables (ClonErrNet program); and (c) comparison of different protein databases based on peptide composition (CompNet program). ASAP server can be useful in protein engineering and/or protein classification studies.

UR - https://www.scopus.com/pages/publications/0034492535

M3 - Article

SN - 1367-4803

VL - 16

SP - 1153

EP - 1154

JO - Bioinformatics

JF - Bioinformatics

IS - 12

ER -

ASAP: Analysis of peptide composition

Abstract

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