Description
The data provided corresponds to the molecular dynamics simulations performed for the wild-type (WT) and E220A mutant of HvoExoI glycosyl hydrolase in covalent complex with glucose (reaction intermediate) and with laminaripentaose bound. The data was used to study the effect of the mutation and how this area affects the correct positioning of the catalytic water and, thus, catalysis.
Three repicates of 1 microsecond each were performed for each system using the AMBER program.
For each replicate (r0, r1 and r2), around 10,000 PDB files of the enzyme:substrate complexes are provided.
Three repicates of 1 microsecond each were performed for each system using the AMBER program.
For each replicate (r0, r1 and r2), around 10,000 PDB files of the enzyme:substrate complexes are provided.
| Date made available | 9 Apr 2025 |
|---|---|
| Publisher | CORA.Repositori de Dades de Recerca |
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MODELIZACION E INGENIERIA COMPUTACIONAL DE ENZIMAS PARA LA DEGRADACION Y VALORIZACION DE LA BIOMASA
Masgrau Fontanet, L. (Principal Investigator) & Fernandez Luengo Flores, X. (Collaborator)
European Regional Development Fund (FEDER)
1/09/22 → 31/08/26
Project: Research Projects and Other Grants
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Projecte: Ingeniería computacional de enzimas que sintetizan e hidrolizan carbohidratos
Masgrau Fontanet, L. (Principal Investigator)
1/07/23 → 31/12/25
Project: Research Projects and Other Grants
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Estudios y desarrollos computacionales en química glicobiológica
Masgrau Fontanet, L. (Principal Investigator) & Fernandez Luengo Flores, X. (Collaborator)
Ministerio de Ciencia e Innovación (MICINN), European Regional Development Fund (FEDER)
1/01/19 → 30/09/22
Project: Research Projects and Other Grants
Research output
- 1 Article
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The structure and dynamics of water molecule networks underlie catalytic efficiency in a glycoside exo-hydrolase
Masgrau Fontanet, L., 10 May 2025, In: Communications Biology. 8, 17 p., 729.Research output: Contribution to journal › Article › Research › peer-review
Open Access4 Link opens in a new tab Citations (Scopus)
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